Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 ABALON-201ENST00000629058 1903 ntBASIC20.7■□□□□ 0.91
LIMA1Q9UHB6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIMA1Q9UHB6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIMA1Q9UHB6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 AC233263.1-201ENST00000578059 224 ntBASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 AC069544.1-201ENST00000609399 999 ntBASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LIMA1Q9UHB6 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 AP003097.1-201ENST00000530657 1135 ntBASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMA1Q9UHB6 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 AC018470.1-201ENST00000624790 3129 ntBASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 KRT8P11-201ENST00000409686 1436 ntBASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 AL133373.2-201ENST00000623187 2828 ntBASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 AL162741.1-201ENST00000565563 1558 ntBASIC20.68■□□□□ 0.9
LIMA1Q9UHB6 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 KRT17P3-201ENST00000420566 1262 ntBASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms