Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
LHX3Q9UBR4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.06■□□□□ 0.64
LHX3Q9UBR4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 FAM210CP-201ENST00000445714 574 ntBASIC19.06■□□□□ 0.64
LHX3Q9UBR4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 AC092865.7-201ENST00000641832 219 ntBASIC19.06■□□□□ 0.64
LHX3Q9UBR4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.06■□□□□ 0.64
LHX3Q9UBR4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 AL109659.2-201ENST00000606809 1674 ntBASIC19.05■□□□□ 0.64
LHX3Q9UBR4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 LIN28AP1-201ENST00000429574 405 ntBASIC19.05■□□□□ 0.64
LHX3Q9UBR4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 ATP5G1P1-201ENST00000448724 379 ntBASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 AC036111.1-201ENST00000533973 1582 ntBASIC19.05■□□□□ 0.64
LHX3Q9UBR4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.05■□□□□ 0.64
LHX3Q9UBR4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 WWOX-216ENST00000569818 525 ntBASIC19.04■□□□□ 0.64
LHX3Q9UBR4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 MIR3180-5-201ENST00000583743 153 ntBASIC19.04■□□□□ 0.64
LHX3Q9UBR4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AC008556.1-201ENST00000610908 2040 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms