Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HINT3Q9NQE9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 AL121829.2-201ENST00000620908 328 ntBASIC17.1■□□□□ 0.33
HINT3Q9NQE9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 NOC2LP1-202ENST00000452600 2235 ntBASIC17.1■□□□□ 0.33
HINT3Q9NQE9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HINT3Q9NQE9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 AC073648.6-201ENST00000641589 218 ntBASIC17.09■□□□□ 0.33
HINT3Q9NQE9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HINT3Q9NQE9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.08■□□□□ 0.33
HINT3Q9NQE9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 POM121L13P-201ENST00000422362 380 ntBASIC17.08■□□□□ 0.32
HINT3Q9NQE9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HINT3Q9NQE9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms