Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 RCC2P6-201ENST00000526625 1557 ntBASIC18.79■□□□□ 0.6
SSU72Q9NP77 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.79■□□□□ 0.6
SSU72Q9NP77 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSU72Q9NP77 LINC00896-202ENST00000609602 2128 ntBASIC18.79■□□□□ 0.6
SSU72Q9NP77 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.79■□□□□ 0.6
SSU72Q9NP77 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 AC068587.9-201ENST00000641814 219 ntBASIC18.78■□□□□ 0.6
SSU72Q9NP77 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSU72Q9NP77 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.78■□□□□ 0.6
SSU72Q9NP77 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 AC135776.1-201ENST00000319817 2481 ntBASIC18.77■□□□□ 0.6
SSU72Q9NP77 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.77■□□□□ 0.6
SSU72Q9NP77 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 AF201337.1-201ENST00000520239 748 ntBASIC18.77■□□□□ 0.6
SSU72Q9NP77 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSU72Q9NP77 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.77■□□□□ 0.6
SSU72Q9NP77 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SSU72Q9NP77 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SSU72Q9NP77 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SSU72Q9NP77 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.77■□□□□ 0.59
SSU72Q9NP77 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SSU72Q9NP77 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSU72Q9NP77 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.76■□□□□ 0.59
SSU72Q9NP77 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SSU72Q9NP77 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSU72Q9NP77 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms