Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.5■□□□□ 0.23
NKX3-1Q99801 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NKX3-1Q99801 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
NKX3-1Q99801 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 Z98044.1-201ENST00000632503 1764 ntBASIC16.49■□□□□ 0.23
NKX3-1Q99801 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.49■□□□□ 0.23
NKX3-1Q99801 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NKX3-1Q99801 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 AC093525.10-201ENST00000625130 1569 ntBASIC16.48■□□□□ 0.23
NKX3-1Q99801 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.48■□□□□ 0.23
NKX3-1Q99801 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 YBX1P10-201ENST00000444752 975 ntBASIC16.48■□□□□ 0.23
NKX3-1Q99801 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 RNA5SP413-201ENST00000516373 109 ntBASIC16.48■□□□□ 0.23
NKX3-1Q99801 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 AC092118.2-201ENST00000613495 667 ntBASIC16.48■□□□□ 0.23
NKX3-1Q99801 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms