Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
IFT140Q96RY7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC31.39■■■□□ 2.62
IFT140Q96RY7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC31.39■■■□□ 2.62
IFT140Q96RY7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
IFT140Q96RY7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC31.39■■■□□ 2.62
IFT140Q96RY7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC31.39■■■□□ 2.62
IFT140Q96RY7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC31.39■■■□□ 2.61
IFT140Q96RY7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC31.38■■■□□ 2.61
IFT140Q96RY7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
IFT140Q96RY7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
IFT140Q96RY7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 AL355877.3-201ENST00000622820 899 ntBASIC31.38■■■□□ 2.61
IFT140Q96RY7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC31.38■■■□□ 2.61
IFT140Q96RY7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
IFT140Q96RY7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
IFT140Q96RY7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
IFT140Q96RY7 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 MIR3180-4-201ENST00000582223 153 ntBASIC31.37■■■□□ 2.61
IFT140Q96RY7 AL591684.3-201ENST00000605187 298 ntBASIC31.37■■■□□ 2.61
IFT140Q96RY7 FAM197Y3-203ENST00000618346 717 ntBASIC31.37■■■□□ 2.61
IFT140Q96RY7 KRT89P-201ENST00000620027 1478 ntBASIC31.37■■■□□ 2.61
IFT140Q96RY7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
IFT140Q96RY7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
IFT140Q96RY7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
IFT140Q96RY7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC31.36■■■□□ 2.61
IFT140Q96RY7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC31.36■■■□□ 2.61
IFT140Q96RY7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
IFT140Q96RY7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
IFT140Q96RY7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
IFT140Q96RY7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
IFT140Q96RY7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
IFT140Q96RY7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC31.35■■■□□ 2.61
IFT140Q96RY7 AC096582.2-201ENST00000510860 516 ntBASIC31.35■■■□□ 2.61
IFT140Q96RY7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 AC116407.3-201ENST00000623905 1129 ntBASIC31.35■■■□□ 2.61
IFT140Q96RY7 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC31.35■■■□□ 2.61
IFT140Q96RY7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC31.35■■■□□ 2.61
IFT140Q96RY7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
IFT140Q96RY7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
IFT140Q96RY7 SDHAP1-207ENST00000440850 2000 ntBASIC31.34■■■□□ 2.61
IFT140Q96RY7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
IFT140Q96RY7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
IFT140Q96RY7 NMU-202ENST00000505262 693 ntTSL 3 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 CD63-204ENST00000546939 779 ntTSL 3 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 MIR5100-201ENST00000579544 119 ntBASIC31.34■■■□□ 2.61
IFT140Q96RY7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 AC024563.2-201ENST00000603282 481 ntBASIC31.34■■■□□ 2.61
IFT140Q96RY7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
IFT140Q96RY7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
IFT140Q96RY7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
IFT140Q96RY7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC31.34■■■□□ 2.61
IFT140Q96RY7 CCS-201ENST00000310190 942 ntTSL 5 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
IFT140Q96RY7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 HIST2H3DP1-201ENST00000401004 416 ntBASIC31.33■■■□□ 2.61
IFT140Q96RY7 LBH-204ENST00000406087 559 ntTSL 4 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 AC027601.4-201ENST00000611259 610 ntBASIC31.33■■■□□ 2.61
IFT140Q96RY7 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC31.33■■■□□ 2.61
IFT140Q96RY7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC31.32■■■□□ 2.6
IFT140Q96RY7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
IFT140Q96RY7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms