Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HPS3Q969F9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HPS3Q969F9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.97■□□□□ 0.95
HPS3Q969F9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.97■□□□□ 0.95
HPS3Q969F9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.97■□□□□ 0.95
HPS3Q969F9 AC026471.5-201ENST00000615068 467 ntBASIC20.97■□□□□ 0.95
HPS3Q969F9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.97■□□□□ 0.95
HPS3Q969F9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HPS3Q969F9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.97■□□□□ 0.95
HPS3Q969F9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.96■□□□□ 0.95
HPS3Q969F9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.96■□□□□ 0.95
HPS3Q969F9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.96■□□□□ 0.95
HPS3Q969F9 PRSS44-201ENST00000515154 1146 ntBASIC20.96■□□□□ 0.95
HPS3Q969F9 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.96■□□□□ 0.95
HPS3Q969F9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.96■□□□□ 0.95
HPS3Q969F9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 AP000692.2-201ENST00000608391 879 ntBASIC20.96■□□□□ 0.95
HPS3Q969F9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HPS3Q969F9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.96■□□□□ 0.95
HPS3Q969F9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HPS3Q969F9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.95■□□□□ 0.94
HPS3Q969F9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 NEFHP1-201ENST00000412845 2629 ntBASIC20.95■□□□□ 0.94
HPS3Q969F9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
HPS3Q969F9 AL138781.2-201ENST00000617896 1843 ntBASIC20.95■□□□□ 0.94
HPS3Q969F9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
HPS3Q969F9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 SNORA78-201ENST00000459373 127 ntBASIC20.95■□□□□ 0.94
HPS3Q969F9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.95■□□□□ 0.94
HPS3Q969F9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.95■□□□□ 0.94
HPS3Q969F9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.95■□□□□ 0.94
HPS3Q969F9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.95■□□□□ 0.94
HPS3Q969F9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HPS3Q969F9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.95■□□□□ 0.94
HPS3Q969F9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
HPS3Q969F9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HPS3Q969F9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HPS3Q969F9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 AL355355.2-201ENST00000442321 338 ntBASIC20.94■□□□□ 0.94
HPS3Q969F9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 TSPY15P-201ENST00000457163 923 ntBASIC20.94■□□□□ 0.94
HPS3Q969F9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 AP003071.4-201ENST00000562276 1284 ntBASIC20.94■□□□□ 0.94
HPS3Q969F9 SLC25A1P4-201ENST00000567977 778 ntBASIC20.94■□□□□ 0.94
HPS3Q969F9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 AC083906.6-201ENST00000641366 219 ntBASIC20.94■□□□□ 0.94
HPS3Q969F9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.94■□□□□ 0.94
HPS3Q969F9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.94■□□□□ 0.94
HPS3Q969F9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.94■□□□□ 0.94
HPS3Q969F9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
HPS3Q969F9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HPS3Q969F9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.93■□□□□ 0.94
HPS3Q969F9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HPS3Q969F9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HPS3Q969F9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HPS3Q969F9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HPS3Q969F9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.93■□□□□ 0.94
HPS3Q969F9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
HPS3Q969F9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms