Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MPDU1-224ENST00000584378 475 ntTSL 46.06□□□□□ -1.441e-6■■□□□ 11.5
DDX55Q8NHQ9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.57■■□□□ 1.684e-8■■□□□ 11.5
DDX55Q8NHQ9 FLOT1-202ENST00000413165 856 ntTSL 524.82■■□□□ 1.565e-17■■□□□ 11.5
DDX55Q8NHQ9 FLOT1-209ENST00000476729 562 ntTSL 219.15■□□□□ 0.665e-17■■□□□ 11.5
DDX55Q8NHQ9 FLOT1-205ENST00000438162 888 ntTSL 516.61■□□□□ 0.255e-17■■□□□ 11.5
DDX55Q8NHQ9 RPS13-208ENST00000531908 746 ntTSL 26.53□□□□□ -1.365e-17■■□□□ 11.5
DDX55Q8NHQ9 RPS13-207ENST00000531008 594 ntTSL 26.52□□□□□ -1.375e-17■■□□□ 11.5
DDX55Q8NHQ9 DHRS2-204ENST00000553600 844 ntTSL 217.11■□□□□ 0.332e-40■■□□□ 11.5
DDX55Q8NHQ9 LENG8-203ENST00000421200 594 ntTSL 318.29■□□□□ 0.522e-10■■□□□ 11.5
DDX55Q8NHQ9 UBR4-203ENST00000375225 1533 ntTSL 2 BASIC13.34□□□□□ -0.273e-24■■□□□ 11.5
DDX55Q8NHQ9 UBR4-208ENST00000459947 3873 ntTSL 212.85□□□□□ -0.353e-24■■□□□ 11.5
DDX55Q8NHQ9 AL137127.1-201ENST00000606379 3402 ntBASIC11.44□□□□□ -0.583e-24■■□□□ 11.5
DDX55Q8NHQ9 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC8.91□□□□□ -0.981e-9■■□□□ 11.5
DDX55Q8NHQ9 UBR4-214ENST00000486515 536 ntTSL 38.09□□□□□ -1.113e-24■■□□□ 11.5
DDX55Q8NHQ9 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.181e-9■■□□□ 11.5
DDX55Q8NHQ9 KHK-206ENST00000490823 1396 ntTSL 523.08■■□□□ 1.298e-17■■□□□ 11.5
DDX55Q8NHQ9 KHK-204ENST00000464371 1042 ntTSL 1 (best)19.55■□□□□ 0.728e-17■■□□□ 11.5
DDX55Q8NHQ9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.348e-17■■□□□ 11.5
DDX55Q8NHQ9 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.298e-17■■□□□ 11.5
DDX55Q8NHQ9 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.352e-7■■□□□ 11.5
DDX55Q8NHQ9 LMF2-203ENST00000504717 1233 ntTSL 532.44■■■□□ 2.785e-6■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.565e-6■■□□□ 11.5
DDX55Q8NHQ9 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.04■■■□□ 2.41e-7■■□□□ 11.5
DDX55Q8NHQ9 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.04■■■□□ 2.41e-7■■□□□ 11.5
DDX55Q8NHQ9 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.04■■■□□ 2.41e-7■■□□□ 11.5
DDX55Q8NHQ9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.385e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-208ENST00000592052 1637 nt29.45■■■□□ 2.312e-8■■□□□ 11.5
DDX55Q8NHQ9 RHOT2-216ENST00000567017 1094 ntTSL 528.44■■■□□ 2.142e-11■■□□□ 11.5
DDX55Q8NHQ9 PSME4-208ENST00000481518 886 ntTSL 528.37■■■□□ 2.135e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-210ENST00000592618 1877 ntTSL 527.73■■■□□ 2.032e-8■■□□□ 11.5
DDX55Q8NHQ9 RHOT2-219ENST00000568950 1343 ntTSL 527.62■■■□□ 2.012e-11■■□□□ 11.5
DDX55Q8NHQ9 LBH-208ENST00000467242 1689 ntTSL 227.29■■□□□ 1.965e-6■■□□□ 11.5
DDX55Q8NHQ9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.12■■□□□ 1.935e-6■■□□□ 11.5
DDX55Q8NHQ9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.72■■□□□ 1.871e-7■■□□□ 11.5
DDX55Q8NHQ9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.775e-6■■□□□ 11.5
DDX55Q8NHQ9 RHOT2-210ENST00000563637 993 ntTSL 524.62■■□□□ 1.532e-11■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-210ENST00000541873 1002 ntTSL 224.5■■□□□ 1.515e-6■■□□□ 11.5
DDX55Q8NHQ9 C7orf50-208ENST00000491163 621 ntAPPRIS ALT2 TSL 324.37■■□□□ 1.495e-6■■□□□ 11.5
DDX55Q8NHQ9 RHOT2-205ENST00000562333 1052 ntTSL 524.2■■□□□ 1.462e-11■■□□□ 11.5
DDX55Q8NHQ9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.441e-9■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.425e-6■■□□□ 11.5
DDX55Q8NHQ9 DEDD2-203ENST00000593804 1586 ntTSL 223.88■■□□□ 1.411e-9■■□□□ 11.5
DDX55Q8NHQ9 ARF3-204ENST00000485410 563 ntTSL 323.74■■□□□ 1.395e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.372e-8■■□□□ 11.5
DDX55Q8NHQ9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC23.05■■□□□ 1.281e-7■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-209ENST00000540981 832 ntTSL 523.03■■□□□ 1.285e-6■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC22.69■■□□□ 1.225e-6■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.211e-7■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-203ENST00000596171 759 ntTSL 222.6■■□□□ 1.211e-7■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-205ENST00000599219 799 ntTSL 222.6■■□□□ 1.211e-7■■□□□ 11.5
DDX55Q8NHQ9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.25e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.192e-8■■□□□ 11.5
DDX55Q8NHQ9 C7orf50-207ENST00000488073 853 ntTSL 522.37■■□□□ 1.175e-6■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-209ENST00000601476 771 ntTSL 222.24■■□□□ 1.151e-7■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.24■■□□□ 1.151e-7■■□□□ 11.5
DDX55Q8NHQ9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.03■■□□□ 1.121e-9■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.95■■□□□ 1.11e-7■■□□□ 11.5
DDX55Q8NHQ9 HBA2-203ENST00000482565 640 ntTSL 1 (best)21.76■■□□□ 1.074e-39■■□□□ 11.5
DDX55Q8NHQ9 RABAC1-206ENST00000600292 653 ntTSL 221.72■■□□□ 1.071e-7■■□□□ 11.5
DDX55Q8NHQ9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.064e-39■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.055e-6■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.4■■□□□ 1.025e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.22■□□□□ 0.995e-6■■□□□ 11.5
DDX55Q8NHQ9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.981e-7■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.98■□□□□ 0.955e-6■■□□□ 11.5
DDX55Q8NHQ9 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.92■□□□□ 0.945e-6■■□□□ 11.5
DDX55Q8NHQ9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.949e-24■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.88■□□□□ 0.935e-6■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.935e-6■■□□□ 11.5
DDX55Q8NHQ9 MCM2-207ENST00000477668 2510 ntTSL 220.81■□□□□ 0.925e-6■■□□□ 11.5
DDX55Q8NHQ9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.891e-7■■□□□ 11.5
DDX55Q8NHQ9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.863e-7■■□□□ 11.5
DDX55Q8NHQ9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.29■□□□□ 0.841e-7■■□□□ 11.5
DDX55Q8NHQ9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.845e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-211ENST00000593068 1965 ntTSL 520.22■□□□□ 0.832e-8■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.13■□□□□ 0.812e-8■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-211ENST00000599874 636 ntTSL 220.05■□□□□ 0.85e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-213ENST00000601419 717 ntTSL 219.96■□□□□ 0.795e-6■■□□□ 11.5
DDX55Q8NHQ9 SH3BP1-202ENST00000417536 2858 ntTSL 219.89■□□□□ 0.775e-6■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.765e-6■■□□□ 11.5
DDX55Q8NHQ9 EML2-206ENST00000586405 630 ntTSL 319.58■□□□□ 0.725e-6■■□□□ 11.5
DDX55Q8NHQ9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.75e-6■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.4■□□□□ 0.75e-6■■□□□ 11.5
DDX55Q8NHQ9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.695e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-205ENST00000586704 2538 ntTSL 519.36■□□□□ 0.692e-8■■□□□ 11.5
DDX55Q8NHQ9 SRRM2-220ENST00000574593 1440 ntTSL 319.36■□□□□ 0.693e-13■■□□□ 11.5
DDX55Q8NHQ9 MED25-205ENST00000593767 829 ntTSL 319.25■□□□□ 0.671e-7■■□□□ 11.5
DDX55Q8NHQ9 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC19.12■□□□□ 0.651e-9■■□□□ 11.5
DDX55Q8NHQ9 TSPO-204ENST00000428336 672 ntTSL 519.06■□□□□ 0.641e-7■■□□□ 11.5
DDX55Q8NHQ9 C7orf50-205ENST00000444428 507 ntAPPRIS ALT2 TSL 319.01■□□□□ 0.635e-6■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19■□□□□ 0.635e-6■■□□□ 11.5
DDX55Q8NHQ9 MED25-207ENST00000595185 760 ntTSL 1 (best)18.97■□□□□ 0.631e-7■■□□□ 11.5
DDX55Q8NHQ9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.613e-7■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.81■□□□□ 0.65e-6■■□□□ 11.5
DDX55Q8NHQ9 AP2A1-205ENST00000597774 2196 ntTSL 518.66■□□□□ 0.582e-11■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.65■□□□□ 0.585e-6■■□□□ 11.5
DDX55Q8NHQ9 PSMD4-211ENST00000476855 1232 ntTSL 218.63■□□□□ 0.571e-7■■□□□ 11.5
DDX55Q8NHQ9 IGF2R-203ENST00000475584 597 ntTSL 318.58■□□□□ 0.568e-7■■□□□ 11.5
DDX55Q8NHQ9 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.47■□□□□ 0.555e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.45■□□□□ 0.545e-6■■□□□ 11.5
Retrieved 100 of 15,504 protein–RNA pairs in 57.8 ms