Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 AC136469.2-201ENST00000623944 1028 ntBASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 AC093525.10-201ENST00000625130 1569 ntBASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28AQ8IWP9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 AC108860.2-201ENST00000562760 2183 ntBASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 AL161938.1-201ENST00000569833 2180 ntBASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28AQ8IWP9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms