Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 AL589743.5-201ENST00000616611 1050 ntBASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.69■□□□□ 0.1
PDLIM3Q53GG5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PDLIM3Q53GG5 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 AL353708.3-201ENST00000610272 989 ntBASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 AC005363.2-201ENST00000618631 242 ntBASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 AC113410.3-201ENST00000623366 203 ntBASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PDLIM3Q53GG5 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 CROCCP3-202ENST00000420820 1947 ntBASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 AC092368.3-202ENST00000574180 1591 ntBASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 AC116351.2-201ENST00000606540 1585 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms