Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC016734.2-201ENST00000624325 1377 ntBASIC16.27■□□□□ 0.2
ABCA4P78363 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCA4P78363 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
ABCA4P78363 TCF3P1-201ENST00000423021 1937 ntBASIC16.27■□□□□ 0.2
ABCA4P78363 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCA4P78363 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCA4P78363 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.27■□□□□ 0.2
ABCA4P78363 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCA4P78363 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.27■□□□□ 0.2
ABCA4P78363 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.27■□□□□ 0.19
ABCA4P78363 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ABCA4P78363 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ABCA4P78363 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 AC020763.4-201ENST00000623414 4170 ntBASIC16.26■□□□□ 0.19
ABCA4P78363 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 AC139530.3-201ENST00000620344 690 ntBASIC16.26■□□□□ 0.19
ABCA4P78363 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.26■□□□□ 0.19
ABCA4P78363 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 AL022342.1-201ENST00000400363 863 ntBASIC16.26■□□□□ 0.19
ABCA4P78363 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.26■□□□□ 0.19
ABCA4P78363 AL732292.2-201ENST00000609649 430 ntBASIC16.26■□□□□ 0.19
ABCA4P78363 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ABCA4P78363 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 LINC01311-201ENST00000565162 1445 ntBASIC16.26■□□□□ 0.19
ABCA4P78363 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
ABCA4P78363 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ABCA4P78363 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.25■□□□□ 0.19
ABCA4P78363 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.25■□□□□ 0.19
ABCA4P78363 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.25■□□□□ 0.19
ABCA4P78363 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.25■□□□□ 0.19
ABCA4P78363 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ABCA4P78363 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.25■□□□□ 0.19
ABCA4P78363 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 AC012615.1-201ENST00000565797 1299 ntBASIC16.25■□□□□ 0.19
ABCA4P78363 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ABCA4P78363 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.25■□□□□ 0.19
ABCA4P78363 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ABCA4P78363 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ABCA4P78363 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.24■□□□□ 0.19
ABCA4P78363 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms