Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CX3CR1P49238 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CX3CR1P49238 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CX3CR1P49238 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CX3CR1P49238 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.64■□□□□ 0.25
CX3CR1P49238 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 AC006058.3-201ENST00000606217 1069 ntBASIC16.64■□□□□ 0.25
CX3CR1P49238 AC124016.1-201ENST00000609552 612 ntBASIC16.64■□□□□ 0.25
CX3CR1P49238 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.64■□□□□ 0.25
CX3CR1P49238 AC073648.6-201ENST00000641589 218 ntBASIC16.64■□□□□ 0.25
CX3CR1P49238 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.64■□□□□ 0.25
CX3CR1P49238 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CX3CR1P49238 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CX3CR1P49238 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CX3CR1P49238 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CR1P49238 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.63■□□□□ 0.25
CX3CR1P49238 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CX3CR1P49238 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CX3CR1P49238 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.63■□□□□ 0.25
CX3CR1P49238 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.63■□□□□ 0.25
CX3CR1P49238 TSPY23P-201ENST00000440136 739 ntBASIC16.63■□□□□ 0.25
CX3CR1P49238 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.63■□□□□ 0.25
CX3CR1P49238 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CR1P49238 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.63■□□□□ 0.25
CX3CR1P49238 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CR1P49238 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CR1P49238 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.63■□□□□ 0.25
CX3CR1P49238 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CX3CR1P49238 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.63■□□□□ 0.25
CX3CR1P49238 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.62■□□□□ 0.25
CX3CR1P49238 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CX3CR1P49238 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.62■□□□□ 0.25
CX3CR1P49238 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.62■□□□□ 0.25
CX3CR1P49238 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.62■□□□□ 0.25
CX3CR1P49238 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CX3CR1P49238 RN7SL471P-201ENST00000580476 299 ntBASIC16.62■□□□□ 0.25
CX3CR1P49238 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 AC110285.5-201ENST00000611501 352 ntBASIC16.62■□□□□ 0.25
CX3CR1P49238 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.62■□□□□ 0.25
CX3CR1P49238 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CX3CR1P49238 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CX3CR1P49238 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CX3CR1P49238 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms