Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LHX1P48742 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.06■□□□□ 0.8
LHX1P48742 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LHX1P48742 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LHX1P48742 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
LHX1P48742 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LHX1P48742 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 RNF152P1-201ENST00000397754 604 ntBASIC20.05■□□□□ 0.8
LHX1P48742 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 AC009947.2-201ENST00000444014 672 ntBASIC20.05■□□□□ 0.8
LHX1P48742 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 MIR3180-5-201ENST00000583743 153 ntBASIC20.05■□□□□ 0.8
LHX1P48742 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
LHX1P48742 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.05■□□□□ 0.8
LHX1P48742 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX1P48742 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX1P48742 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 AL109659.2-201ENST00000606809 1674 ntBASIC20.04■□□□□ 0.8
LHX1P48742 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.04■□□□□ 0.8
LHX1P48742 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.04■□□□□ 0.8
LHX1P48742 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.04■□□□□ 0.8
LHX1P48742 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.04■□□□□ 0.8
LHX1P48742 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.04■□□□□ 0.8
LHX1P48742 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.04■□□□□ 0.8
LHX1P48742 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LHX1P48742 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 KRT8P32-201ENST00000512863 1461 ntBASIC20.04■□□□□ 0.8
LHX1P48742 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LHX1P48742 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX1P48742 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LHX1P48742 AC116562.4-201ENST00000641316 2276 ntBASIC20.04■□□□□ 0.8
LHX1P48742 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
LHX1P48742 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.03■□□□□ 0.8
LHX1P48742 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
LHX1P48742 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LHX1P48742 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.03■□□□□ 0.8
LHX1P48742 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 TSPY5P-201ENST00000426936 936 ntBASIC20.03■□□□□ 0.8
LHX1P48742 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.03■□□□□ 0.8
LHX1P48742 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.03■□□□□ 0.8
LHX1P48742 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.03■□□□□ 0.8
LHX1P48742 AC011558.1-201ENST00000623459 338 ntBASIC20.03■□□□□ 0.8
LHX1P48742 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LHX1P48742 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX1P48742 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.03■□□□□ 0.8
LHX1P48742 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 RCC2P3-201ENST00000418112 1537 ntBASIC20.02■□□□□ 0.8
LHX1P48742 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
LHX1P48742 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
LHX1P48742 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.02■□□□□ 0.8
LHX1P48742 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 AC063952.2-201ENST00000498792 1227 ntBASIC20.02■□□□□ 0.8
LHX1P48742 LINC01238-205ENST00000567549 1107 ntBASIC20.02■□□□□ 0.8
LHX1P48742 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.02■□□□□ 0.8
LHX1P48742 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX1P48742 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.02■□□□□ 0.79
LHX1P48742 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX1P48742 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX1P48742 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.01■□□□□ 0.79
LHX1P48742 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX1P48742 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.01■□□□□ 0.79
LHX1P48742 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.01■□□□□ 0.79
LHX1P48742 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX1P48742 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX1P48742 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms