Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 AC005082.1-201ENST00000413042 2259 ntBASIC14.43□□□□□ -0.1
HLA-DMBP28068 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 KRT17P3-201ENST00000420566 1262 ntBASIC14.43□□□□□ -0.1
HLA-DMBP28068 AL158047.1-201ENST00000445918 881 ntBASIC14.43□□□□□ -0.1
HLA-DMBP28068 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 AC142381.4-202ENST00000563973 229 ntBASIC14.43□□□□□ -0.1
HLA-DMBP28068 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 MMD2-204ENST00000612910 778 ntTSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HLA-DMBP28068 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HLA-DMBP28068 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 POM121L13P-201ENST00000422362 380 ntBASIC14.42□□□□□ -0.1
HLA-DMBP28068 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 AC008403.3-201ENST00000598924 454 ntBASIC14.42□□□□□ -0.1
HLA-DMBP28068 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HLA-DMBP28068 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.42□□□□□ -0.1
HLA-DMBP28068 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AC098590.1-201ENST00000468126 897 ntBASIC14.41□□□□□ -0.1
HLA-DMBP28068 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AC093827.2-201ENST00000512654 315 ntBASIC14.41□□□□□ -0.1
HLA-DMBP28068 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AC093525.10-201ENST00000625130 1569 ntBASIC14.41□□□□□ -0.1
HLA-DMBP28068 Z98044.1-201ENST00000632503 1764 ntBASIC14.41□□□□□ -0.1
HLA-DMBP28068 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms