Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.5■□□□□ 0.55
TNFP01375 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.5■□□□□ 0.55
TNFP01375 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TNFP01375 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
TNFP01375 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TNFP01375 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.49■□□□□ 0.55
TNFP01375 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.49■□□□□ 0.55
TNFP01375 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.49■□□□□ 0.55
TNFP01375 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TNFP01375 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TNFP01375 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.49■□□□□ 0.55
TNFP01375 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TNFP01375 FEM1AP3-201ENST00000403722 1741 ntBASIC18.49■□□□□ 0.55
TNFP01375 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.49■□□□□ 0.55
TNFP01375 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.49■□□□□ 0.55
TNFP01375 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.49■□□□□ 0.55
TNFP01375 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 AC036111.1-201ENST00000533973 1582 ntBASIC18.48■□□□□ 0.55
TNFP01375 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.48■□□□□ 0.55
TNFP01375 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.48■□□□□ 0.55
TNFP01375 AC112907.2-201ENST00000448639 330 ntBASIC18.48■□□□□ 0.55
TNFP01375 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TNFP01375 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.48■□□□□ 0.55
TNFP01375 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
TNFP01375 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TNFP01375 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TNFP01375 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.48■□□□□ 0.55
TNFP01375 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TNFP01375 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFP01375 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
TNFP01375 AL158211.5-201ENST00000623583 2518 ntBASIC18.48■□□□□ 0.55
TNFP01375 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
TNFP01375 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.47■□□□□ 0.55
TNFP01375 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.47■□□□□ 0.55
TNFP01375 FAM86EP-206ENST00000510506 987 ntBASIC18.47■□□□□ 0.55
TNFP01375 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TNFP01375 AP000550.4-202ENST00000639755 178 ntBASIC18.47■□□□□ 0.55
TNFP01375 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TNFP01375 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms