Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.98■□□□□ 0.63
SHOX2O60902 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
SHOX2O60902 SLC7A5P1-201ENST00000568957 537 ntBASIC18.98■□□□□ 0.63
SHOX2O60902 AL354811.1-201ENST00000610286 706 ntBASIC18.98■□□□□ 0.63
SHOX2O60902 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SHOX2O60902 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.98■□□□□ 0.63
SHOX2O60902 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.98■□□□□ 0.63
SHOX2O60902 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
SHOX2O60902 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.98■□□□□ 0.63
SHOX2O60902 AL391005.1-201ENST00000623953 2435 ntBASIC18.98■□□□□ 0.63
SHOX2O60902 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SHOX2O60902 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SHOX2O60902 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.97■□□□□ 0.63
SHOX2O60902 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SHOX2O60902 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.97■□□□□ 0.63
SHOX2O60902 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SHOX2O60902 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.97■□□□□ 0.63
SHOX2O60902 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.97■□□□□ 0.63
SHOX2O60902 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.97■□□□□ 0.63
SHOX2O60902 AP001160.3-201ENST00000601484 763 ntBASIC18.97■□□□□ 0.63
SHOX2O60902 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SHOX2O60902 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHOX2O60902 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
SHOX2O60902 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.96■□□□□ 0.63
SHOX2O60902 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.96■□□□□ 0.63
SHOX2O60902 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.96■□□□□ 0.63
SHOX2O60902 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.96■□□□□ 0.63
SHOX2O60902 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
SHOX2O60902 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.96■□□□□ 0.63
SHOX2O60902 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SHOX2O60902 AP001094.4-201ENST00000579008 2176 ntBASIC18.96■□□□□ 0.63
SHOX2O60902 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.96■□□□□ 0.63
SHOX2O60902 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHOX2O60902 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SHOX2O60902 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SHOX2O60902 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SHOX2O60902 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.95■□□□□ 0.62
SHOX2O60902 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.95■□□□□ 0.62
SHOX2O60902 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.95■□□□□ 0.62
SHOX2O60902 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SHOX2O60902 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SHOX2O60902 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SHOX2O60902 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
SHOX2O60902 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHOX2O60902 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SHOX2O60902 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms