Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH5O43196 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 KSR1P1-201ENST00000446298 240 ntBASIC25.62■■□□□ 1.69
MSH5O43196 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
MSH5O43196 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH5O43196 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH5O43196 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC25.62■■□□□ 1.69
MSH5O43196 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH5O43196 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH5O43196 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH5O43196 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC25.61■■□□□ 1.69
MSH5O43196 AL445669.2-201ENST00000454425 421 ntBASIC25.61■■□□□ 1.69
MSH5O43196 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 ECEL1P2-202ENST00000465689 757 ntBASIC25.61■■□□□ 1.69
MSH5O43196 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH5O43196 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 KRT16P1-201ENST00000399124 1418 ntBASIC25.61■■□□□ 1.69
MSH5O43196 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH5O43196 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC25.61■■□□□ 1.69
MSH5O43196 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH5O43196 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH5O43196 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
MSH5O43196 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.6■■□□□ 1.69
MSH5O43196 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
MSH5O43196 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH5O43196 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
MSH5O43196 MGST1-204ENST00000396209 979 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
MSH5O43196 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.6■■□□□ 1.69
MSH5O43196 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH5O43196 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.6■■□□□ 1.69
MSH5O43196 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.6■■□□□ 1.69
MSH5O43196 AC091076.1-201ENST00000610741 619 ntBASIC25.6■■□□□ 1.69
MSH5O43196 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
MSH5O43196 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH5O43196 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH5O43196 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH5O43196 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH5O43196 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
MSH5O43196 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
MSH5O43196 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC25.59■■□□□ 1.69
MSH5O43196 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.59■■□□□ 1.69
MSH5O43196 AK4P3-201ENST00000418260 669 ntBASIC25.59■■□□□ 1.69
MSH5O43196 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
MSH5O43196 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC25.59■■□□□ 1.69
MSH5O43196 KRT18P56-201ENST00000507275 550 ntBASIC25.59■■□□□ 1.69
MSH5O43196 CD69-203ENST00000536709 1020 ntTSL 2 BASIC25.59■■□□□ 1.69
MSH5O43196 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH5O43196 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25.59■■□□□ 1.69
MSH5O43196 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH5O43196 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
MSH5O43196 FZD10-202ENST00000539839 3282 ntBASIC25.59■■□□□ 1.69
MSH5O43196 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
MSH5O43196 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH5O43196 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH5O43196 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH5O43196 NIFKP9-201ENST00000419265 221 ntBASIC25.58■■□□□ 1.69
MSH5O43196 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC25.58■■□□□ 1.69
MSH5O43196 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.58■■□□□ 1.69
MSH5O43196 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH5O43196 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH5O43196 AC023632.3-201ENST00000521633 145 ntBASIC25.58■■□□□ 1.69
MSH5O43196 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
MSH5O43196 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH5O43196 LGALS8-AS1-201ENST00000487567 1457 ntBASIC25.58■■□□□ 1.69
MSH5O43196 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC25.58■■□□□ 1.69
MSH5O43196 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
MSH5O43196 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms