Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PDLIM1O00151 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM1O00151 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM1O00151 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM1O00151 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.02■□□□□ 0.48
PDLIM1O00151 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
PDLIM1O00151 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PDLIM1O00151 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.02■□□□□ 0.48
PDLIM1O00151 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.02■□□□□ 0.48
PDLIM1O00151 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM1O00151 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM1O00151 AL355472.2-201ENST00000422958 438 ntBASIC18.02■□□□□ 0.48
PDLIM1O00151 AC069152.1-201ENST00000438030 544 ntBASIC18.02■□□□□ 0.48
PDLIM1O00151 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PDLIM1O00151 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.02■□□□□ 0.48
PDLIM1O00151 MIR4758-201ENST00000577688 71 ntBASIC18.02■□□□□ 0.48
PDLIM1O00151 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
PDLIM1O00151 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM1O00151 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.02■□□□□ 0.47
PDLIM1O00151 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
PDLIM1O00151 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM1O00151 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.01■□□□□ 0.47
PDLIM1O00151 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM1O00151 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM1O00151 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.01■□□□□ 0.47
PDLIM1O00151 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PDLIM1O00151 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM1O00151 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.01■□□□□ 0.47
PDLIM1O00151 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM1O00151 AC098934.4-201ENST00000564127 592 ntBASIC18.01■□□□□ 0.47
PDLIM1O00151 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM1O00151 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM1O00151 KRT17P1-201ENST00000399211 1546 ntBASIC18.01■□□□□ 0.47
PDLIM1O00151 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PDLIM1O00151 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM1O00151 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PDLIM1O00151 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18■□□□□ 0.47
PDLIM1O00151 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
PDLIM1O00151 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18■□□□□ 0.47
PDLIM1O00151 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18■□□□□ 0.47
PDLIM1O00151 KRT18P68-201ENST00000392293 1000 ntBASIC18■□□□□ 0.47
PDLIM1O00151 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18■□□□□ 0.47
PDLIM1O00151 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18■□□□□ 0.47
PDLIM1O00151 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18■□□□□ 0.47
PDLIM1O00151 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18■□□□□ 0.47
PDLIM1O00151 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PDLIM1O00151 AC133041.1-202ENST00000642053 222 ntBASIC18■□□□□ 0.47
PDLIM1O00151 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PDLIM1O00151 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18■□□□□ 0.47
PDLIM1O00151 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM1O00151 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PDLIM1O00151 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM1O00151 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM1O00151 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM1O00151 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM1O00151 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.99■□□□□ 0.47
PDLIM1O00151 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM1O00151 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PDLIM1O00151 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms