Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 KRT18P68-201ENST00000392293 1000 ntBASIC13.85□□□□□ -0.19
SMKR1H3BMG3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 AC010536.3-201ENST00000620306 533 ntBASIC13.85□□□□□ -0.19
SMKR1H3BMG3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 UBQLN4P1-201ENST00000461599 1801 ntBASIC13.85□□□□□ -0.19
SMKR1H3BMG3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SMKR1H3BMG3 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 AC104417.2-201ENST00000562989 1793 ntBASIC13.84□□□□□ -0.19
SMKR1H3BMG3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 AC023632.3-201ENST00000521633 145 ntBASIC13.84□□□□□ -0.19
SMKR1H3BMG3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SMKR1H3BMG3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
SMKR1H3BMG3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 KRT19P1-201ENST00000405746 1186 ntBASIC13.83□□□□□ -0.2
SMKR1H3BMG3 YBX1P1-201ENST00000445822 960 ntBASIC13.83□□□□□ -0.2
SMKR1H3BMG3 KRT18P14-201ENST00000534205 1250 ntBASIC13.83□□□□□ -0.2
SMKR1H3BMG3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC13.83□□□□□ -0.2
SMKR1H3BMG3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms