Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 AC090164.3-201ENST00000610780 2143 ntBASIC15.34■□□□□ 0.05
FOXA2Q9Y261 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA2Q9Y261 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA2Q9Y261 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA2Q9Y261 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA2Q9Y261 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
FOXA2Q9Y261 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 AC009113.1-201ENST00000570267 2443 ntBASIC15.33■□□□□ 0.04
FOXA2Q9Y261 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 AC083906.6-201ENST00000641366 219 ntBASIC15.33■□□□□ 0.04
FOXA2Q9Y261 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA2Q9Y261 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 PEX7-202ENST00000367756 680 ntTSL 3 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 TSPY21P-201ENST00000433481 731 ntBASIC15.32■□□□□ 0.04
FOXA2Q9Y261 UBE2SP1-201ENST00000450587 669 ntBASIC15.32■□□□□ 0.04
FOXA2Q9Y261 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms