Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 AC073210.2-201ENST00000430369 194 ntBASIC16.53■□□□□ 0.24
NKX3-1Q99801 AC069152.1-201ENST00000438030 544 ntBASIC16.53■□□□□ 0.24
NKX3-1Q99801 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 AC092368.3-202ENST00000574180 1591 ntBASIC16.52■□□□□ 0.24
NKX3-1Q99801 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.52■□□□□ 0.24
NKX3-1Q99801 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
NKX3-1Q99801 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
NKX3-1Q99801 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NKX3-1Q99801 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.52■□□□□ 0.23
NKX3-1Q99801 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
NKX3-1Q99801 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
NKX3-1Q99801 KRT8P8-201ENST00000434750 1448 ntBASIC16.52■□□□□ 0.23
NKX3-1Q99801 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
NKX3-1Q99801 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
NKX3-1Q99801 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
NKX3-1Q99801 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
NKX3-1Q99801 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 LTB4R2-202ENST00000528054 3092 ntBASIC16.51■□□□□ 0.23
NKX3-1Q99801 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.51■□□□□ 0.23
NKX3-1Q99801 KRT18P6-201ENST00000555540 1265 ntBASIC16.51■□□□□ 0.23
NKX3-1Q99801 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 PCDHB18P-201ENST00000524813 2368 ntBASIC16.51■□□□□ 0.23
NKX3-1Q99801 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NKX3-1Q99801 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.51■□□□□ 0.23
NKX3-1Q99801 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms