Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 CROCCP3-202ENST00000420820 1947 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 AC018553.1-201ENST00000616682 1458 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 SLC25A3P1-201ENST00000443844 931 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 ATP5G1P1-201ENST00000448724 379 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 KRT18P16-201ENST00000510337 1294 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 AP005242.2-201ENST00000580065 1175 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 AC010947.1-201ENST00000623454 693 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.43■□□□□ 0.7
SKA1Q96BD8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SKA1Q96BD8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA1Q96BD8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 CYP2D8P-201ENST00000433633 1490 ntBASIC19.42■□□□□ 0.7
SKA1Q96BD8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA1Q96BD8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SKA1Q96BD8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 EGLN1P1-201ENST00000531623 762 ntBASIC19.41■□□□□ 0.7
SKA1Q96BD8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA1Q96BD8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SKA1Q96BD8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 TERF1P1-201ENST00000311003 1181 ntBASIC19.4■□□□□ 0.7
SKA1Q96BD8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms