Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 DOC2GP-204ENST00000639052 2548 ntBASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN3Q8NCR9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 AC021242.3-201ENST00000607598 1377 ntBASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 AL162741.1-201ENST00000565563 1558 ntBASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLRN3Q8NCR9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 TEX21P-204ENST00000641479 1693 ntBASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms