Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 MIR6821-201ENST00000617625 74 ntBASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.94■□□□□ 0.3
CCDC58Q4VC31 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 AC068880.1-201ENST00000507289 2297 ntBASIC16.94■□□□□ 0.3
CCDC58Q4VC31 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.93■□□□□ 0.3
CCDC58Q4VC31 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 FEM1AP3-201ENST00000403722 1741 ntBASIC16.93■□□□□ 0.3
CCDC58Q4VC31 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC58Q4VC31 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 AC093787.1-201ENST00000450396 207 ntBASIC16.92■□□□□ 0.3
CCDC58Q4VC31 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 AC005829.2-201ENST00000571422 1056 ntBASIC16.92■□□□□ 0.3
CCDC58Q4VC31 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 KRT8P8-201ENST00000434750 1448 ntBASIC16.92■□□□□ 0.3
CCDC58Q4VC31 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC58Q4VC31 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.91■□□□□ 0.3
CCDC58Q4VC31 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC58Q4VC31 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms