Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KRT16P6-202ENST00000425692 1426 ntBASIC18.21■□□□□ 0.51
COL28A1Q2UY09 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
COL28A1Q2UY09 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL28A1Q2UY09 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 AC112907.3-201ENST00000577781 2400 ntBASIC18.2■□□□□ 0.5
COL28A1Q2UY09 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.2■□□□□ 0.5
COL28A1Q2UY09 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 YBX1P10-201ENST00000444752 975 ntBASIC18.19■□□□□ 0.5
COL28A1Q2UY09 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL28A1Q2UY09 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 AL160237.2-201ENST00000556165 472 ntBASIC18.18■□□□□ 0.5
COL28A1Q2UY09 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 AC104692.2-201ENST00000603054 253 ntBASIC18.18■□□□□ 0.5
COL28A1Q2UY09 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 AC087289.5-201ENST00000586076 3175 ntBASIC18.18■□□□□ 0.5
COL28A1Q2UY09 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.18■□□□□ 0.5
COL28A1Q2UY09 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms