Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS1Q01581 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS1Q01581 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
HMGCS1Q01581 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGCS1Q01581 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGCS1Q01581 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS1Q01581 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGCS1Q01581 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 KRT16P5-201ENST00000455284 522 ntBASIC18.28■□□□□ 0.52
HMGCS1Q01581 FAM201B-201ENST00000458407 597 ntBASIC18.28■□□□□ 0.52
HMGCS1Q01581 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 AC073648.6-201ENST00000641589 218 ntBASIC18.28■□□□□ 0.52
HMGCS1Q01581 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGCS1Q01581 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 AC007613.1-201ENST00000572811 2597 ntBASIC18.28■□□□□ 0.52
HMGCS1Q01581 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGCS1Q01581 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGCS1Q01581 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGCS1Q01581 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGCS1Q01581 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGCS1Q01581 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HMGCS1Q01581 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGCS1Q01581 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGCS1Q01581 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGCS1Q01581 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
HMGCS1Q01581 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGCS1Q01581 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGCS1Q01581 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGCS1Q01581 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 Z85996.1-201ENST00000494644 937 ntBASIC18.26■□□□□ 0.51
HMGCS1Q01581 RN7SL471P-201ENST00000580476 299 ntBASIC18.26■□□□□ 0.51
HMGCS1Q01581 AC006058.3-201ENST00000606217 1069 ntBASIC18.26■□□□□ 0.51
HMGCS1Q01581 AC083906.6-201ENST00000641366 219 ntBASIC18.26■□□□□ 0.51
HMGCS1Q01581 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 AC005082.1-201ENST00000413042 2259 ntBASIC18.26■□□□□ 0.51
HMGCS1Q01581 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HMGCS1Q01581 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGCS1Q01581 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGCS1Q01581 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 ABHD17AP1-201ENST00000358206 933 ntBASIC18.25■□□□□ 0.51
HMGCS1Q01581 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGCS1Q01581 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS1Q01581 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGCS1Q01581 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGCS1Q01581 AC110285.5-201ENST00000611501 352 ntBASIC18.25■□□□□ 0.51
HMGCS1Q01581 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms