Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CX3CL1P78423 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
CX3CL1P78423 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 AL135905.2-201ENST00000584934 1404 ntBASIC15.28■□□□□ 0.04
CX3CL1P78423 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CX3CL1P78423 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.28■□□□□ 0.04
CX3CL1P78423 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.28■□□□□ 0.04
CX3CL1P78423 KSR1P1-201ENST00000446298 240 ntBASIC15.28■□□□□ 0.04
CX3CL1P78423 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.28■□□□□ 0.04
CX3CL1P78423 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.28■□□□□ 0.04
CX3CL1P78423 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.28■□□□□ 0.04
CX3CL1P78423 AF186192.3-201ENST00000583427 947 ntBASIC15.28■□□□□ 0.04
CX3CL1P78423 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
CX3CL1P78423 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CX3CL1P78423 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CL1P78423 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CX3CL1P78423 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CX3CL1P78423 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.28■□□□□ 0.04
CX3CL1P78423 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.28■□□□□ 0.04
CX3CL1P78423 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.28■□□□□ 0.04
CX3CL1P78423 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CX3CL1P78423 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CX3CL1P78423 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CX3CL1P78423 RPS2P4-201ENST00000476944 856 ntBASIC15.27■□□□□ 0.04
CX3CL1P78423 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CX3CL1P78423 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.27■□□□□ 0.04
CX3CL1P78423 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.27■□□□□ 0.04
CX3CL1P78423 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CX3CL1P78423 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
CX3CL1P78423 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.27■□□□□ 0.03
CX3CL1P78423 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.27■□□□□ 0.03
CX3CL1P78423 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CX3CL1P78423 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.27■□□□□ 0.03
CX3CL1P78423 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CX3CL1P78423 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CX3CL1P78423 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CX3CL1P78423 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CX3CL1P78423 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.26■□□□□ 0.03
CX3CL1P78423 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CX3CL1P78423 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 AC073195.1-201ENST00000607241 877 ntBASIC15.26■□□□□ 0.03
CX3CL1P78423 AC131212.4-201ENST00000623606 975 ntBASIC15.26■□□□□ 0.03
CX3CL1P78423 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CX3CL1P78423 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.26■□□□□ 0.03
CX3CL1P78423 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CX3CL1P78423 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CL1P78423 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
CX3CL1P78423 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms