Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.73■□□□□ 0.75
PTPN9P43378 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.73■□□□□ 0.75
PTPN9P43378 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
PTPN9P43378 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PTPN9P43378 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 KRT8P32-201ENST00000512863 1461 ntBASIC19.73■□□□□ 0.75
PTPN9P43378 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.72■□□□□ 0.75
PTPN9P43378 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTPN9P43378 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.72■□□□□ 0.75
PTPN9P43378 FITM1-202ENST00000559294 800 ntBASIC19.72■□□□□ 0.75
PTPN9P43378 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.72■□□□□ 0.75
PTPN9P43378 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.72■□□□□ 0.75
PTPN9P43378 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 AC093503.3-201ENST00000624917 2352 ntBASIC19.72■□□□□ 0.75
PTPN9P43378 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN9P43378 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTPN9P43378 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN9P43378 AL512353.2-201ENST00000448759 1962 ntBASIC19.72■□□□□ 0.75
PTPN9P43378 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PTPN9P43378 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.71■□□□□ 0.75
PTPN9P43378 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.71■□□□□ 0.75
PTPN9P43378 AP000525.1-201ENST00000608286 694 ntBASIC19.71■□□□□ 0.75
PTPN9P43378 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PTPN9P43378 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.71■□□□□ 0.75
PTPN9P43378 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.71■□□□□ 0.75
PTPN9P43378 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN9P43378 AL031598.1-201ENST00000561511 1773 ntBASIC19.7■□□□□ 0.74
PTPN9P43378 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.7■□□□□ 0.74
PTPN9P43378 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PTPN9P43378 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PTPN9P43378 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.7■□□□□ 0.74
PTPN9P43378 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.7■□□□□ 0.74
PTPN9P43378 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
PTPN9P43378 AC068587.9-201ENST00000641814 219 ntBASIC19.7■□□□□ 0.74
PTPN9P43378 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 HEIH-201ENST00000623091 1652 ntBASIC19.7■□□□□ 0.74
PTPN9P43378 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PTPN9P43378 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
PTPN9P43378 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN9P43378 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN9P43378 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN9P43378 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN9P43378 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
PTPN9P43378 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PTPN9P43378 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN9P43378 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms