Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.91■□□□□ 0.62
XRCC1P18887 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.91■□□□□ 0.62
XRCC1P18887 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.91■□□□□ 0.62
XRCC1P18887 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.91■□□□□ 0.62
XRCC1P18887 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
XRCC1P18887 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.91■□□□□ 0.62
XRCC1P18887 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.91■□□□□ 0.62
XRCC1P18887 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC1P18887 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
XRCC1P18887 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
XRCC1P18887 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.9■□□□□ 0.62
XRCC1P18887 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 ECEL1P3-201ENST00000427961 737 ntBASIC18.9■□□□□ 0.62
XRCC1P18887 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.9■□□□□ 0.62
XRCC1P18887 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.9■□□□□ 0.62
XRCC1P18887 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 AC011506.1-201ENST00000474329 610 ntBASIC18.9■□□□□ 0.62
XRCC1P18887 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.9■□□□□ 0.62
XRCC1P18887 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.9■□□□□ 0.62
XRCC1P18887 AP000525.1-201ENST00000608286 694 ntBASIC18.9■□□□□ 0.62
XRCC1P18887 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.9■□□□□ 0.62
XRCC1P18887 AC130371.2-201ENST00000619443 611 ntBASIC18.9■□□□□ 0.62
XRCC1P18887 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.9■□□□□ 0.62
XRCC1P18887 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.9■□□□□ 0.62
XRCC1P18887 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
XRCC1P18887 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.9■□□□□ 0.62
XRCC1P18887 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC1P18887 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
XRCC1P18887 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
XRCC1P18887 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
XRCC1P18887 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
XRCC1P18887 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.89■□□□□ 0.61
XRCC1P18887 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.89■□□□□ 0.61
XRCC1P18887 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.89■□□□□ 0.61
XRCC1P18887 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.89■□□□□ 0.61
XRCC1P18887 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.89■□□□□ 0.61
XRCC1P18887 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.89■□□□□ 0.61
XRCC1P18887 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 AC005332.8-201ENST00000622750 2735 ntBASIC18.89■□□□□ 0.61
XRCC1P18887 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.89■□□□□ 0.61
XRCC1P18887 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC1P18887 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
XRCC1P18887 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 CROCCP3-202ENST00000420820 1947 ntBASIC18.88■□□□□ 0.61
XRCC1P18887 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
XRCC1P18887 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.88■□□□□ 0.61
XRCC1P18887 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.88■□□□□ 0.61
XRCC1P18887 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.88■□□□□ 0.61
XRCC1P18887 FITM1-202ENST00000559294 800 ntBASIC18.88■□□□□ 0.61
XRCC1P18887 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.88■□□□□ 0.61
XRCC1P18887 AL160286.2-201ENST00000567150 934 ntBASIC18.88■□□□□ 0.61
XRCC1P18887 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.88■□□□□ 0.61
XRCC1P18887 DGCR10-201ENST00000609839 495 ntBASIC18.88■□□□□ 0.61
XRCC1P18887 AC133561.5-201ENST00000635547 218 ntBASIC18.88■□□□□ 0.61
XRCC1P18887 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.88■□□□□ 0.61
XRCC1P18887 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
XRCC1P18887 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC1P18887 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms