Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
CXCL1P09341 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CXCL1P09341 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.72□□□□□ -0.05
CXCL1P09341 AC022211.2-201ENST00000585075 2527 ntBASIC14.72□□□□□ -0.05
CXCL1P09341 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CXCL1P09341 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 IRS3P-201ENST00000223076 1006 ntBASIC14.72□□□□□ -0.05
CXCL1P09341 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC14.72□□□□□ -0.05
CXCL1P09341 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC14.72□□□□□ -0.05
CXCL1P09341 SLC7A5P1-201ENST00000568957 537 ntBASIC14.72□□□□□ -0.05
CXCL1P09341 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL1P09341 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC14.72□□□□□ -0.05
CXCL1P09341 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.71□□□□□ -0.05
CXCL1P09341 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.71□□□□□ -0.05
CXCL1P09341 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.71□□□□□ -0.05
CXCL1P09341 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 AL356309.3-201ENST00000624132 1934 ntBASIC14.71□□□□□ -0.05
CXCL1P09341 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.71□□□□□ -0.05
CXCL1P09341 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CXCL1P09341 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC14.71□□□□□ -0.05
CXCL1P09341 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC14.71□□□□□ -0.05
CXCL1P09341 AC105265.2-201ENST00000467189 838 ntBASIC14.71□□□□□ -0.05
CXCL1P09341 AF213884.3-201ENST00000563833 479 ntBASIC14.71□□□□□ -0.05
CXCL1P09341 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CXCL1P09341 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.71□□□□□ -0.05
CXCL1P09341 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CXCL1P09341 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL1P09341 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CXCL1P09341 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL1P09341 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL1P09341 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL1P09341 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CXCL1P09341 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.7□□□□□ -0.06
CXCL1P09341 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CXCL1P09341 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL1P09341 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 RBM17P2-201ENST00000616397 1405 ntBASIC14.7□□□□□ -0.06
CXCL1P09341 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CXCL1P09341 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 CDV3P1-201ENST00000471403 739 ntBASIC14.7□□□□□ -0.06
CXCL1P09341 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL1P09341 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.7□□□□□ -0.06
CXCL1P09341 FGF8-207ENST00000618991 856 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL1P09341 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms