Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN9O95484 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN9O95484 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN9O95484 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CLDN9O95484 AL353807.1-201ENST00000427475 662 ntBASIC18.35■□□□□ 0.53
CLDN9O95484 KSR1P1-201ENST00000446298 240 ntBASIC18.35■□□□□ 0.53
CLDN9O95484 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.35■□□□□ 0.53
CLDN9O95484 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.35■□□□□ 0.53
CLDN9O95484 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN9O95484 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN9O95484 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN9O95484 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN9O95484 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN9O95484 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN9O95484 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.34■□□□□ 0.53
CLDN9O95484 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN9O95484 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN9O95484 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN9O95484 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.34■□□□□ 0.53
CLDN9O95484 FAM201B-201ENST00000458407 597 ntBASIC18.34■□□□□ 0.53
CLDN9O95484 RPS2P4-201ENST00000476944 856 ntBASIC18.34■□□□□ 0.53
CLDN9O95484 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.34■□□□□ 0.53
CLDN9O95484 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLDN9O95484 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
CLDN9O95484 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
CLDN9O95484 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLDN9O95484 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN9O95484 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.33■□□□□ 0.53
CLDN9O95484 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.33■□□□□ 0.53
CLDN9O95484 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN9O95484 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN9O95484 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN9O95484 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.33■□□□□ 0.53
CLDN9O95484 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN9O95484 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CLDN9O95484 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN9O95484 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN9O95484 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.33■□□□□ 0.52
CLDN9O95484 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
CLDN9O95484 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CLDN9O95484 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN9O95484 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 KRT8P11-201ENST00000409686 1436 ntBASIC18.32■□□□□ 0.52
CLDN9O95484 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN9O95484 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms