Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SIX3O95343 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SIX3O95343 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.55■□□□□ 0.56
SIX3O95343 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX3O95343 AC124016.1-201ENST00000609552 612 ntBASIC18.55■□□□□ 0.56
SIX3O95343 AC083906.6-201ENST00000641366 219 ntBASIC18.55■□□□□ 0.56
SIX3O95343 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
SIX3O95343 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 AC090164.3-201ENST00000610780 2143 ntBASIC18.55■□□□□ 0.56
SIX3O95343 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 ANO7L1-203ENST00000602586 1720 ntBASIC18.54■□□□□ 0.56
SIX3O95343 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX3O95343 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 KRT16P5-201ENST00000455284 522 ntBASIC18.54■□□□□ 0.56
SIX3O95343 Z85996.1-201ENST00000494644 937 ntBASIC18.54■□□□□ 0.56
SIX3O95343 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX3O95343 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SIX3O95343 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX3O95343 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX3O95343 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX3O95343 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SIX3O95343 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SIX3O95343 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX3O95343 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX3O95343 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX3O95343 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.53■□□□□ 0.56
SIX3O95343 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX3O95343 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SIX3O95343 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX3O95343 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX3O95343 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX3O95343 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SIX3O95343 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
SIX3O95343 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SIX3O95343 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 AC073648.6-201ENST00000641589 218 ntBASIC18.52■□□□□ 0.56
SIX3O95343 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
SIX3O95343 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.52■□□□□ 0.56
SIX3O95343 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
SIX3O95343 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX3O95343 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SIX3O95343 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms