Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VPS4BO75351 SDHAP1-207ENST00000440850 2000 ntBASIC18.59■□□□□ 0.57
VPS4BO75351 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS4BO75351 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VPS4BO75351 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS4BO75351 TMPOP1-202ENST00000424642 1267 ntBASIC18.59■□□□□ 0.57
VPS4BO75351 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 AC124016.1-201ENST00000609552 612 ntBASIC18.59■□□□□ 0.57
VPS4BO75351 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VPS4BO75351 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VPS4BO75351 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VPS4BO75351 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS4BO75351 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS4BO75351 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.58■□□□□ 0.57
VPS4BO75351 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
VPS4BO75351 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.58■□□□□ 0.57
VPS4BO75351 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
VPS4BO75351 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS4BO75351 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.58■□□□□ 0.57
VPS4BO75351 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
VPS4BO75351 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS4BO75351 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
VPS4BO75351 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VPS4BO75351 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 AC133681.1-201ENST00000465482 601 ntBASIC18.58■□□□□ 0.56
VPS4BO75351 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS4BO75351 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS4BO75351 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
VPS4BO75351 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS4BO75351 MTDHP1-201ENST00000605323 784 ntBASIC18.58■□□□□ 0.56
VPS4BO75351 CD177P1-201ENST00000606252 935 ntBASIC18.58■□□□□ 0.56
VPS4BO75351 AC110285.5-201ENST00000611501 352 ntBASIC18.58■□□□□ 0.56
VPS4BO75351 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS4BO75351 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
VPS4BO75351 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS4BO75351 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
VPS4BO75351 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS4BO75351 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS4BO75351 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS4BO75351 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS4BO75351 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS4BO75351 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS4BO75351 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms