Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.19■□□□□ 0.5
CPNE3O75131 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.19■□□□□ 0.5
CPNE3O75131 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE3O75131 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.19■□□□□ 0.5
CPNE3O75131 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE3O75131 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE3O75131 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE3O75131 AL353719.1-201ENST00000566847 864 ntBASIC18.19■□□□□ 0.5
CPNE3O75131 LINC01238-205ENST00000567549 1107 ntBASIC18.19■□□□□ 0.5
CPNE3O75131 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CPNE3O75131 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CPNE3O75131 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE3O75131 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE3O75131 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE3O75131 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE3O75131 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE3O75131 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 AK4P3-201ENST00000418260 669 ntBASIC18.18■□□□□ 0.5
CPNE3O75131 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE3O75131 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CPNE3O75131 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE3O75131 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CPNE3O75131 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CPNE3O75131 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE3O75131 TCF3P1-201ENST00000423021 1937 ntBASIC18.17■□□□□ 0.5
CPNE3O75131 AC018445.3-201ENST00000624177 1945 ntBASIC18.17■□□□□ 0.5
CPNE3O75131 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE3O75131 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CPNE3O75131 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE3O75131 NTF6B-201ENST00000591913 560 ntBASIC18.17■□□□□ 0.5
CPNE3O75131 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE3O75131 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE3O75131 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE3O75131 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE3O75131 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPNE3O75131 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE3O75131 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE3O75131 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE3O75131 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE3O75131 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms