Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHGA1Q9Y5H4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 TSPY19P-201ENST00000418461 509 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 HLA-F-220ENST00000434407 884 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 TSPY18P-201ENST00000441642 509 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 IFNL4P1-201ENST00000607083 540 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 AL121772.3-201ENST00000610840 674 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 GPAT2P1-201ENST00000444924 1672 ntBASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PCDHGA1Q9Y5H4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 MIR3180-5-201ENST00000583743 153 ntBASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC01711-201ENST00000598340 967 ntBASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PCDHGA1Q9Y5H4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PCDHGA1Q9Y5H4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 AC104417.2-201ENST00000562989 1793 ntBASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 MIR662-201ENST00000384847 95 ntBASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 AL023284.2-201ENST00000405850 579 ntBASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 DRAXINP1-201ENST00000437611 948 ntBASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms