Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC24.8■■□□□ 1.56
RTF1Q92541 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
RTF1Q92541 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
RTF1Q92541 AC073130.3-201ENST00000624389 2278 ntBASIC24.8■■□□□ 1.56
RTF1Q92541 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC24.8■■□□□ 1.56
RTF1Q92541 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.8■■□□□ 1.56
RTF1Q92541 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.8■■□□□ 1.56
RTF1Q92541 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.79■■□□□ 1.56
RTF1Q92541 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
RTF1Q92541 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RTF1Q92541 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 AP000523.1-201ENST00000398242 1049 ntBASIC24.79■■□□□ 1.56
RTF1Q92541 FAM8A6P-201ENST00000407496 1135 ntBASIC24.79■■□□□ 1.56
RTF1Q92541 AC009947.2-201ENST00000444014 672 ntBASIC24.79■■□□□ 1.56
RTF1Q92541 RNF146-204ENST00000476956 884 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RTF1Q92541 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.79■■□□□ 1.56
RTF1Q92541 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC24.79■■□□□ 1.56
RTF1Q92541 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RTF1Q92541 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RTF1Q92541 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RTF1Q92541 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC24.79■■□□□ 1.56
RTF1Q92541 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC24.79■■□□□ 1.56
RTF1Q92541 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
RTF1Q92541 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.78■■□□□ 1.56
RTF1Q92541 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.78■■□□□ 1.56
RTF1Q92541 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC24.78■■□□□ 1.56
RTF1Q92541 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 NT5C-210ENST00000582160 860 ntTSL 2 BASIC24.78■■□□□ 1.56
RTF1Q92541 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
RTF1Q92541 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 GPAT2P1-201ENST00000444924 1672 ntBASIC24.78■■□□□ 1.56
RTF1Q92541 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RTF1Q92541 KRT8P3-201ENST00000519669 1449 ntBASIC24.78■■□□□ 1.56
RTF1Q92541 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC24.77■■□□□ 1.56
RTF1Q92541 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
RTF1Q92541 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC24.77■■□□□ 1.56
RTF1Q92541 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
RTF1Q92541 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC24.77■■□□□ 1.56
RTF1Q92541 AL441883.1-201ENST00000566170 1045 ntBASIC24.77■■□□□ 1.56
RTF1Q92541 NEK4P2-201ENST00000580004 1012 ntBASIC24.77■■□□□ 1.56
RTF1Q92541 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
RTF1Q92541 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
RTF1Q92541 CR769767.2-201ENST00000622735 460 ntBASIC24.77■■□□□ 1.56
RTF1Q92541 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.77■■□□□ 1.56
RTF1Q92541 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RTF1Q92541 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
RTF1Q92541 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC24.76■■□□□ 1.55
RTF1Q92541 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.76■■□□□ 1.55
RTF1Q92541 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
RTF1Q92541 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.76■■□□□ 1.55
RTF1Q92541 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
RTF1Q92541 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC24.76■■□□□ 1.55
RTF1Q92541 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
RTF1Q92541 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms