Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCHCR1Q8TD31 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCHCR1Q8TD31 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 AC233263.1-201ENST00000578059 224 ntBASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 RN7SL471P-201ENST00000580476 299 ntBASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 MTDHP1-201ENST00000605323 784 ntBASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCHCR1Q8TD31 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.77■□□□□ 0.75
CCHCR1Q8TD31 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 TMEM191A-211ENST00000637163 1067 ntBASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 FEM1AP3-201ENST00000403722 1741 ntBASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCHCR1Q8TD31 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms