Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 TSPY14P-201ENST00000303979 915 ntBASIC5.86□□□□□ -1.47
SYNE1Q8NF91 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC5.86□□□□□ -1.47
SYNE1Q8NF91 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AC007952.6-201ENST00000573168 2673 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AC003957.1-201ENST00000625108 2673 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 MFAP1P1-201ENST00000442257 1255 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PTK2-216ENST00000519881 863 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AL023803.3-201ENST00000615559 522 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 RCC2P6-201ENST00000526625 1557 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CALM3-202ENST00000391918 702 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 TSPY17P-201ENST00000450329 467 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 ME2-218ENST00000640965 2476 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 FEM1AP1-201ENST00000431297 1995 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 HCG4P8-203ENST00000443049 980 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 YBX1P2-201ENST00000489612 999 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 LTBR-211ENST00000543190 785 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 GRAMD4P8-201ENST00000605465 1115 ntBASIC5.85□□□□□ -1.47
SYNE1Q8NF91 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC5.85□□□□□ -1.47
SYNE1Q8NF91 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SYNE1Q8NF91 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms