Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 TSPY20P-201ENST00000450910 630 ntBASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 AL512353.2-201ENST00000448759 1962 ntBASIC17.59■□□□□ 0.41
ZNF540Q8NDQ6 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
ZNF540Q8NDQ6 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 HLA-G-202ENST00000376815 851 ntBASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 HLA-G-203ENST00000376818 1127 ntBASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
ZNF540Q8NDQ6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms