Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 NUDT16P1-203ENST00000513809 620 ntBASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC65Q8IXS2 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 MIR718-201ENST00000390190 70 ntBASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 MESTP1-201ENST00000404287 994 ntBASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 AC008550.1-201ENST00000511500 884 ntBASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC65Q8IXS2 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC65Q8IXS2 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC65Q8IXS2 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC65Q8IXS2 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 AC116562.2-201ENST00000507042 360 ntBASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC65Q8IXS2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 CKBP1-201ENST00000565489 1086 ntBASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AP000692.2-201ENST00000608391 879 ntBASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 AP006294.2-201ENST00000641667 209 ntBASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC65Q8IXS2 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC65Q8IXS2 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms