Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RNF111Q6ZNA4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 AC141586.3-201ENST00000562166 1838 ntBASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 ABHD17AP1-201ENST00000358206 933 ntBASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 KRT18P29-201ENST00000397031 1267 ntBASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 ITM2C-210ENST00000620962 501 ntBASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 AC073648.6-201ENST00000641589 218 ntBASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF111Q6ZNA4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 AP001271.2-201ENST00000624018 1556 ntBASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 Z98044.1-201ENST00000632503 1764 ntBASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 AC128676.1-201ENST00000454392 318 ntBASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF111Q6ZNA4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 AL121829.2-201ENST00000620908 328 ntBASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF111Q6ZNA4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF111Q6ZNA4 PRKY-204ENST00000533551 1019 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms