Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNFT1Q5M7Z0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AC116407.4-201ENST00000623319 1061 ntBASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 AC036111.1-201ENST00000533973 1582 ntBASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RNFT1Q5M7Z0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 TEX21P-204ENST00000641479 1693 ntBASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RNFT1Q5M7Z0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 AL136038.3-201ENST00000561909 1096 ntBASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.09■□□□□ 0.33
RNFT1Q5M7Z0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms