Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
FOXF1Q12946 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXF1Q12946 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXF1Q12946 AP005242.2-201ENST00000580065 1175 ntBASIC17.22■□□□□ 0.35
FOXF1Q12946 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXF1Q12946 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
FOXF1Q12946 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXF1Q12946 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXF1Q12946 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXF1Q12946 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXF1Q12946 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXF1Q12946 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
FOXF1Q12946 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXF1Q12946 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXF1Q12946 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
FOXF1Q12946 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
FOXF1Q12946 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXF1Q12946 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 FITM1-202ENST00000559294 800 ntBASIC17.21■□□□□ 0.35
FOXF1Q12946 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
FOXF1Q12946 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXF1Q12946 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXF1Q12946 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
FOXF1Q12946 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
FOXF1Q12946 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
FOXF1Q12946 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXF1Q12946 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXF1Q12946 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
FOXF1Q12946 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXF1Q12946 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXF1Q12946 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXF1Q12946 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXF1Q12946 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
FOXF1Q12946 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
FOXF1Q12946 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.19■□□□□ 0.34
FOXF1Q12946 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
FOXF1Q12946 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXF1Q12946 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXF1Q12946 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
FOXF1Q12946 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXF1Q12946 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.18■□□□□ 0.34
FOXF1Q12946 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
FOXF1Q12946 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXF1Q12946 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXF1Q12946 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
FOXF1Q12946 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms