Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LSM3P62310 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LSM3P62310 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LSM3P62310 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LSM3P62310 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LSM3P62310 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.15■□□□□ 0.34
LSM3P62310 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.14■□□□□ 0.34
LSM3P62310 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.14■□□□□ 0.33
LSM3P62310 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.14■□□□□ 0.33
LSM3P62310 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.14■□□□□ 0.33
LSM3P62310 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.14■□□□□ 0.33
LSM3P62310 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 AC024257.2-201ENST00000549699 147 ntBASIC17.14■□□□□ 0.33
LSM3P62310 AC012414.1-201ENST00000556676 535 ntBASIC17.14■□□□□ 0.33
LSM3P62310 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.14■□□□□ 0.33
LSM3P62310 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.14■□□□□ 0.33
LSM3P62310 AC073592.3-201ENST00000625118 1834 ntBASIC17.14■□□□□ 0.33
LSM3P62310 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.14■□□□□ 0.33
LSM3P62310 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.14■□□□□ 0.33
LSM3P62310 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LSM3P62310 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
LSM3P62310 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LSM3P62310 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.13■□□□□ 0.33
LSM3P62310 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.13■□□□□ 0.33
LSM3P62310 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 AC080080.1-201ENST00000625121 2420 ntBASIC17.13■□□□□ 0.33
LSM3P62310 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LSM3P62310 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.13■□□□□ 0.33
LSM3P62310 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LSM3P62310 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms