Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 AC079598.2-202ENST00000546624 1451 ntBASIC16.73■□□□□ 0.27
SOX2P48431 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SOX2P48431 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX2P48431 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.72■□□□□ 0.27
SOX2P48431 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX2P48431 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SOX2P48431 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX2P48431 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX2P48431 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX2P48431 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX2P48431 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SOX2P48431 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 YBX1P10-201ENST00000444752 975 ntBASIC16.71■□□□□ 0.27
SOX2P48431 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.71■□□□□ 0.27
SOX2P48431 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 AC022517.1-201ENST00000592429 346 ntBASIC16.71■□□□□ 0.27
SOX2P48431 AL050303.2-201ENST00000619798 666 ntBASIC16.71■□□□□ 0.27
SOX2P48431 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SOX2P48431 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX2P48431 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SOX2P48431 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SOX2P48431 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SOX2P48431 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.7■□□□□ 0.26
SOX2P48431 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX2P48431 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX2P48431 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX2P48431 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX2P48431 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SOX2P48431 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.7■□□□□ 0.26
SOX2P48431 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.7■□□□□ 0.26
SOX2P48431 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX2P48431 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms