Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.86■□□□□ 0.45
RFX3P48380 AP002982.1-201ENST00000492365 877 ntBASIC17.86■□□□□ 0.45
RFX3P48380 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX3P48380 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
RFX3P48380 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.86■□□□□ 0.45
RFX3P48380 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.86■□□□□ 0.45
RFX3P48380 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
RFX3P48380 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.86■□□□□ 0.45
RFX3P48380 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX3P48380 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
RFX3P48380 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.85■□□□□ 0.45
RFX3P48380 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.85■□□□□ 0.45
RFX3P48380 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.85■□□□□ 0.45
RFX3P48380 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
RFX3P48380 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.85■□□□□ 0.45
RFX3P48380 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RFX3P48380 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 HLA-A-209ENST00000638375 975 ntBASIC17.85■□□□□ 0.45
RFX3P48380 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
RFX3P48380 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RFX3P48380 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.85■□□□□ 0.45
RFX3P48380 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RFX3P48380 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.84■□□□□ 0.45
RFX3P48380 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RFX3P48380 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.84■□□□□ 0.45
RFX3P48380 TEX21P-204ENST00000641479 1693 ntBASIC17.84■□□□□ 0.45
RFX3P48380 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.84■□□□□ 0.45
RFX3P48380 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.84■□□□□ 0.45
RFX3P48380 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.84■□□□□ 0.45
RFX3P48380 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RFX3P48380 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.84■□□□□ 0.45
RFX3P48380 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.84■□□□□ 0.45
RFX3P48380 OR6D1P-202ENST00000641007 5290 ntBASIC17.84■□□□□ 0.45
RFX3P48380 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RFX3P48380 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
RFX3P48380 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
RFX3P48380 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RFX3P48380 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.83■□□□□ 0.45
RFX3P48380 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RFX3P48380 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RFX3P48380 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
RFX3P48380 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
RFX3P48380 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.83■□□□□ 0.45
RFX3P48380 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.83■□□□□ 0.45
RFX3P48380 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
RFX3P48380 GCSHP5-201ENST00000443090 522 ntBASIC17.83■□□□□ 0.44
RFX3P48380 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.83■□□□□ 0.44
RFX3P48380 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.83■□□□□ 0.44
RFX3P48380 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.83■□□□□ 0.44
RFX3P48380 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.83■□□□□ 0.44
RFX3P48380 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.83■□□□□ 0.44
RFX3P48380 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms