Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 LINC00265-3P-201ENST00000447588 903 ntBASIC19.17■□□□□ 0.66
COL4A2P08572 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A2P08572 AC104390.1-201ENST00000555663 520 ntBASIC19.17■□□□□ 0.66
COL4A2P08572 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A2P08572 GPR32P1-201ENST00000601788 811 ntBASIC19.17■□□□□ 0.66
COL4A2P08572 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A2P08572 AC112497.1-201ENST00000624824 639 ntBASIC19.17■□□□□ 0.66
COL4A2P08572 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
COL4A2P08572 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A2P08572 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A2P08572 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A2P08572 LINC00167-201ENST00000530583 1419 ntBASIC19.16■□□□□ 0.66
COL4A2P08572 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 AL022342.1-201ENST00000400363 863 ntBASIC19.16■□□□□ 0.66
COL4A2P08572 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.16■□□□□ 0.66
COL4A2P08572 NUS1P1-201ENST00000446295 882 ntBASIC19.16■□□□□ 0.66
COL4A2P08572 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A2P08572 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A2P08572 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A2P08572 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL4A2P08572 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A2P08572 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.15■□□□□ 0.66
COL4A2P08572 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A2P08572 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A2P08572 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A2P08572 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A2P08572 AL390719.2-201ENST00000606993 987 ntBASIC19.15■□□□□ 0.66
COL4A2P08572 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL4A2P08572 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A2P08572 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A2P08572 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A2P08572 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A2P08572 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A2P08572 AKR1C7P-201ENST00000305623 895 ntBASIC19.14■□□□□ 0.66
COL4A2P08572 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A2P08572 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.14■□□□□ 0.66
COL4A2P08572 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.14■□□□□ 0.66
COL4A2P08572 AC106795.1-205ENST00000512851 1056 ntBASIC19.14■□□□□ 0.66
COL4A2P08572 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.14■□□□□ 0.66
COL4A2P08572 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
COL4A2P08572 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A2P08572 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A2P08572 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A2P08572 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A2P08572 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A2P08572 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A2P08572 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A2P08572 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A2P08572 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A2P08572 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.14■□□□□ 0.65
COL4A2P08572 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A2P08572 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A2P08572 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A2P08572 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A2P08572 AC138894.3-201ENST00000603787 634 ntBASIC19.14■□□□□ 0.65
COL4A2P08572 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL4A2P08572 AC233702.3-201ENST00000578656 1387 ntBASIC19.14■□□□□ 0.65
COL4A2P08572 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL4A2P08572 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 RCC2P3-201ENST00000418112 1537 ntBASIC19.13■□□□□ 0.65
COL4A2P08572 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.13■□□□□ 0.65
COL4A2P08572 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A2P08572 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A2P08572 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A2P08572 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.13■□□□□ 0.65
COL4A2P08572 MRPL3P1-201ENST00000400109 1033 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms