Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP006587.1-201ENST00000534129 1502 ntBASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 ABALON-201ENST00000629058 1903 ntBASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 AC139713.2-201ENST00000641328 2723 ntBASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 AC005181.1-201ENST00000604782 1256 ntBASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28BQ9BUN5 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 AC087623.3-201ENST00000607047 1098 ntBASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 AC073592.3-201ENST00000625118 1834 ntBASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CCDC28BQ9BUN5 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RPS2P52-201ENST00000469610 820 ntBASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms