Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 KRT8P11-201ENST00000409686 1436 ntBASIC17.28■□□□□ 0.36
ATG4DQ86TL0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
ATG4DQ86TL0 RCC2P6-201ENST00000526625 1557 ntBASIC17.28■□□□□ 0.36
ATG4DQ86TL0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 AC120498.9-201ENST00000339021 3867 ntBASIC17.27■□□□□ 0.36
ATG4DQ86TL0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 AC091390.4-202ENST00000476426 537 ntBASIC17.27■□□□□ 0.36
ATG4DQ86TL0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 AL031985.4-201ENST00000642138 673 ntBASIC17.27■□□□□ 0.36
ATG4DQ86TL0 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4DQ86TL0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 AC093525.10-201ENST00000625130 1569 ntBASIC17.27■□□□□ 0.35
ATG4DQ86TL0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
ATG4DQ86TL0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AL138781.2-201ENST00000617896 1843 ntBASIC17.26■□□□□ 0.35
ATG4DQ86TL0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AC004951.3-201ENST00000418645 1148 ntBASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AC012618.2-201ENST00000428058 849 ntBASIC17.26■□□□□ 0.35
ATG4DQ86TL0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AL049637.2-201ENST00000641778 930 ntBASIC17.26■□□□□ 0.35
ATG4DQ86TL0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4DQ86TL0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 AL135905.2-201ENST00000584934 1404 ntBASIC17.25■□□□□ 0.35
ATG4DQ86TL0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 TSPY15P-201ENST00000457163 923 ntBASIC17.25■□□□□ 0.35
ATG4DQ86TL0 PRSS44-201ENST00000515154 1146 ntBASIC17.25■□□□□ 0.35
ATG4DQ86TL0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ATG4DQ86TL0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms