Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 AL020996.1-203ENST00000536896 2307 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 ZNF815P-204ENST00000434898 1737 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 HMGA1P5-201ENST00000412453 271 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 AC026396.1-201ENST00000419388 421 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 TSPY5P-201ENST00000426936 936 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 SLC25A1P4-201ENST00000567977 778 ntBASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SH3RF1Q7Z6J0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SH3RF1Q7Z6J0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 PCED1CP-201ENST00000419887 785 ntBASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 FAM86EP-206ENST00000510506 987 ntBASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 AP006587.1-201ENST00000534129 1502 ntBASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.79■■□□□ 1.08
SH3RF1Q7Z6J0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 TEX21P-204ENST00000641479 1693 ntBASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SH3RF1Q7Z6J0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms